SIGNAL: Spatial varIable Gene detectioN And cLassification. An R package that detects spatially variable genes in spatial transcriptomics data and classifies them by cell-type, spatial, and cell-type-specific spatial effects.

AIGen: An artificial intelligence software for complex genetic data analysis. Briefings in Bioinformatics, 2024. Paper

KernelNN: Association test methods based on kernel neural networks for high-dimensional genetic and sequencing data.

GMDR: Generalized multifactor dimensionality reduction for detecting gene-gene and gene-environment interactions underlying complex traits. Current Genomics, 2016.